Useful links

Database and server:

http://www.rcsb.org/pdb/home/home.do

http://www.ebi.ac.uk/Tools/msa/

http://blast.ncbi.nlm.nih.gov/Blast.cgi

http://scop.mrc-lmb.cam.ac.uk/scop/

http://www.uniprot.org/uniprot/

http://espript.ibcp.fr/ESPript/ESPript/

http://gtrnadb.ucsc.edu/index.html

http://www.ebi.ac.uk/Tools/clustalw2/index.html

http://meme-suite.org/

https://web.expasy.org/protparam/

https://prosite.expasy.org/scanprosite/

https://zhanglab.ccmb.med.umich.edu/I-TASSER/

https://zhanglab.ccmb.med.umich.edu/ModRefiner/

https://www.ebi.ac.uk/thornton-srv/software/PROCHECK/

http://mordred.bioc.cam.ac.uk/~rapper/rampage.php

http://webapps.embl-hamburg.de/rapido/

http://ekhidna2.biocenter.helsinki.fi/dali/

Structure visualization:

https://pymol.org/2/

https://www.cgl.ucsf.edu/chimera/download.html

Structure analysis:

http://www.gromacs.org/

https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/